From | 2007-03-18 |
To | 2007-03-22 |
Course |
Lectures and workshops address key topics in bioinformatics relevant for the lab scientist. The addressed audience is represented by PhD students as well as Post-docs. Lectures will be accompanied with demonstrations of software etc. Participants should have a sound biological and some very basic knowledge in bioinformatics (BLAST etc.). The course wants to improve the basic understanding of contemporary bioinformatics rather than being a collection of recipes.
|
Venue | Bertinoro di Romagna, ITALY |
Directors | H. W. Mewes (Munich, Germany) |
Speakers | J. Cox (Martinsried, Germany), J.Ernst,(Munich, GERMANY), D. Frishman (Munich, GERMANY), G. R?tsch (T?bingen, GERMANY), T. Rattei (Munich, GERMANY), M. Scherf (Munich, GERMANY), V. St?mpflen (Munich, GERMANY), Y. Wang (Munich, GERMANY), R. Zimmer (Munich, GERMANY) |
Programme | 17th March - Arrival at the University Residential Centre of Bertinoro
Sunday, March 18th - TOPIC 1: Sequence and Genomes Analysis
Morning session
08:30
H.W.Mewes
Introduction
09:00
H.W.Mewes
Structuring the sequence space
10:30
Coffee break
11:00
D. Frishman
Genome analysis
12:30
Lunch break
Afternoon session
14:00
D. Frishman
Genome analysis II
15:30
Coffee break
16:00
Y. Wang
Non coding sequences
18:00
Demonstration workshops
Monday, March 19 th ? Topic 2: Methods and Resources
Morning session
08:30
J. Ernst
Algorithms for Bioinformatics
10:30
Coffee break
10:45
T. Rattei
Resources on the WWW: databases, bioconductor, R-package
12:30
Lunch break
Afternoon session
14:00
V. St?mpflen
Data structures, data integration and methods (Semantics, portals, BioXM etc.)
16:00
Coffee break
16:30
Demonstration Workshops
Tuesday, March 20th ? Topic 3: Regulation, Networks and Structures
Morning session
09:00
D. Frishman
Protein structures
10:30
Coffee break
11:00
M. Scherf
Bioinformatics of Expression Regulation
12:30
Lunch break
Afternoon session
14:00
R. Zimmer
Interaction and Biological Networks
16:00
Coffee break
16:30
J. Cox
Bioinformatics for Expression analysis
18:00
Demonstration workshops
Wednesday, March 21st - Topic 4: Bioinformatics for Genetics
Morning session
09:00
Y. Wang
Bioinformatics for Genetics: genetic variations
11:00
Coffee break
11:30
G. Ratsch
Data mining
12:30
Lunch break
Afternoon session
14:00
G. Ratsch
Introduction to Machine Learning Support Vector Machines and Kernels Applications in Computational Biology Open Source software packages
16:00
Free afternoon
Optional sightseeing
Thursday, March 22nd ? Topic 5: Omics and Systems Biology
Morning session
09:00
Faculty
Demonstration Workshops
10:00
Coffee break
10:30
H.W. Mewes
Basics in Molecular Systems Biology
12:30
Lunch break
Departure: in the early afternoon |